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- Season 1 overviewApr 5-Dec 6, 200935 episodesSeason 1 episodes1. Fullmetal Alchemist Apr 5, 2009
- The Elric brothers take part in a manhunt for the dangerous Isaac the Freezer.
- 2. The First Day Apr 12, 2009
- A glimpse into the past reveals the pain and desperation that drove the Elric boys to break alchemy's greatest taboo - human transmutation - and their reasons for becoming dogs of the military.
- 3. City of Heresy Apr 19, 2009
- Science and faith collide when the Elrics confront Father Cornello. He claims to work miracles, but the brothers suspect him of abusing a Philosopher's Stone to manipulate his flock.—Anonymous
- 4. An Alchemist's Anguish Apr 26, 2009
- The Elrics meet Shou Tucker, a leading researcher in the field of chimeras.
- 5. Rain of Sorrows May 3, 2009
- Edward and Alphonse are attacked by Scar, a mysterious killer wanted for a string of gruesome murders. His powers are incredible - and his obsession with slaying State Alchemists might be justified.—Anonymous
- 6. Road of Hope May 10, 2009
- The Elrics meet Dr. Marcoh, a State Alchemist running from past sins.
- 7. Hidden Truths May 17, 2009
- The Elrics discover the ingredient needed to create a Philosopher's Stone.
- 8. The Fifth Laboratory May 24, 2009
- Ed and Al furiously battle the Fifth Laboratory's psychotic guards. In the chaos, the truth behind the Philosopher's Stone is buried beneath rubble - and disturbing new questions are unearthed.—Anonymous
- 9. Created Feelings May 31, 2009
- Al is haunted by the idea that his entire existence was simply created by his brother.
- 10. Separate Destinations Jun 7, 2009
- When the conspiracy surrounding the Philosopher's Stone closes in on the highest ranks of the military, one of Mustang's most trusted and cherished allies is murdered.—Anonymous
- 11. Miracle at Rush Valley Jun 14, 2009
- The Elrics, realizing alchemy has yet to unlock the mysteries of creating life, feel powerless when a new friend goes into labor. Winry, however, jumps into action with a young thief named Paninya.
- 12. One Is All, All Is One Jun 21, 2009
- Hohenheim's visit ends with a grave warning to Pinako.
- 13. Beasts of Dublith Jun 28, 2009
- Ed and Al battle the Fifth Laboratory's psychotic guards.
- 14. Those Who Lurk Underground Jul 5, 2009
- In a violent clash with Greed, King Bradley proves to be a brutal opponent. But the man who finally destroys the Ultimate Shield is more powerful than even the Fuhrer himself.—Anonymous
- 15. Envoy From the East Jul 12, 2009
- The Elrics fight with Ling Yao, Lan Fan and Fu, visitors from Xing seeking the Philosopher's Stone.
- 16. Footsteps of a Comrade-in-Arms Jul 19, 2009
- After learning of Hughes's fate, Ed and Al are ravaged by sadness and guilt. Envy still hides in plain sight among the State Alchemists, and another Homunculus is on the verge of infiltrating their ranks as well.—Anonymous
- 17. Cold Flame Jul 26, 2009
- After being freed by an unlikely liberator, Ross's escape is interrupted by Mustang.
- 18. The Arrogant Palm of a Small Human Aug 2, 2009
- Ed's journey offers surprising new details behind Mustang's alleyway encounter with Ross.
- 19. Death of the Undying Aug 9, 2009
- Mustang, Alphonse, Havoc and Hawkeye split up to search a military laboratory.
- 20. Father Before the Grave Aug 16, 2009
- Ed finds hope among the ruins of his childhood and is confident Al can be returned to his body.
- 21. Advance of the Fool Aug 30, 2009
- Ed and Al devise a risky strategy to learn more about the Homunculi.
- 22. Backs in the Distance Sep 6, 2009
- Scar's mission to destroy those who slaughtered his people is fueled by justifiable rage. Upon learning the role Scar played in her parents' deaths, Winry claims those murderous feelings as her own.—Anonymous
- 23. Girl on the Battlefield Sep 13, 2009
- Cooperation between Mustang's cabal and Ling Yao's band leads to the capture of a Homunculus.
- 24. Inside the Belly Sep 20, 2009
- Gluttony's powers overwhelm the Elrics; Mustang finds himself in the belly of the beast.
- 25. Doorway of Darkness Sep 27, 2009
- The Homunculi are winning. Ed and Ling face a horrific enemy within the hellish expanse of Gluttony's gut. In Central, Mustang can only watch as his loyal band of soldiers is divided by Bradley.
- 26. Reunion Oct 4, 2009
- Al finds the one called Father, and Mustang hears the tale of Bradley's creation.
- 27. Interlude Party Oct 11, 2009
- Visions of the past play out as Hohenheim reflects on the follies of man; the pain that comes with family, the truths of Alchemy and the roots of war.—puma31219
- 28. Father Oct 18, 2009
- The Elrics come face to face with Father - and his face is familiar indeed. Powerless and amazed, Ed and Al can only watch as Father creates a new Homunculus with alchemy that should be impossible.
- 29. Struggle of the Fool Oct 25, 2009
- The Elrics are at Bradley's mercy; if the brothers make one wrong move, those dearest to them will pay. As Mustang quietly gathers allies at his side, Ed discovers there may be no need to find a Philosopher's Stone.
- 30. The Ishvalan War of Extermination Nov 1, 2009
- Edward listens Hawkeye's tale of a time when idealistic young soldiers were tasked with genocide.