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- Season 3 overviewJul 29, 2008-Sep 18, 200918 episodesSeason 3 episodes1. Bad to the Drone Jul 29, 2008
- The Department of Defense sends a corporate fixer to town during an anti-missile test.
- 2. What About Bob? Aug 5, 2008
- Inhabitants of Global's sealed biosphere begin to display characteristics of ancient life forms.
- 3. Best in Faux Aug 12, 2008
- The dog show malfunctions; Zoe worries about the accelerated physics program.
- 4. I Do Over Aug 19, 2008
- Carter repeatedly experiences the same lousy day while his free-spirited sister visits town.
- 5. Show Me the Mummy Aug 26, 2008
- After the tomb of an Egyptian queen is opened, a search for a mummy starts.
- 6. Phased and Confused Sep 9, 2008
- Carter's job becomes more difficult when a superhero emerges; Thorne's subterranean search.
- 7. Here Come the Suns Sep 16, 2008
- Carter, Allison and Zane are forced to investigate the arrival of a second sun over Eureka.
- 8. From Fear to Eternity Sep 23, 2008
- A scientific find produces sinister results and trust issues; Zoe's life is imperiled.
- 9. Welcome Back, Carter Jul 10, 2009
- Carter and Jo try to find answers when gravity wells begin to form around town.
- 10. Your Face or Mine Jul 17, 2009
- While Carter takes a recertification test, Deputy Lupo, as acting sheriff, begins to act strangely.
- 11. Insane in the P-Brane Jul 24, 2009
- Allison brings in Dr. Tess Fontana to reopen Section Five; poltergeists.
- 12. It's Not Easy Being Green Jul 31, 2009
- Pranking occurs when Eureka hosts a bowling tournament against rival Area 51.
- 13. If You Build It ... Aug 7, 2009
- Teens erect a structure of stolen scrap and electronics while under control during sleep.
- 14. Ship Happens Aug 14, 2009
- Carter fears that Henry's ship may have caused electrical anomalies around town.
- 15. Shower the People Aug 21, 2009
- Baby gifts for Allison's shower test the boundaries of ennvironmental design.
- 16. You Don't Know Jack Aug 28, 2009
- The town experiences memory loss while Tess is recording a databank.
- 17. Have an Ice Day Sep 11, 2009
- The arrival of an Arctic ice core brings a new Ice Age to Eureka.
- 18. What Goes Around, Comes Around Sep 18, 2009
- Zoe prepares to leave for college; Tess receives a job offer in Australia.