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- Season 2 overviewSep 17, 2009-May 20, 201023 episodesSeason 2 episodes1. A New Day in the Old Town Sep 17, 2009
- Paul tries to get information about Olivia's return from the alternate reality.
- 2. Night of Desirable Objects Sep 24, 2009
- Construction worker is drawn into an underground tunnel full of human remains.
- 3. Fracture Oct 1, 2009
- A bomb blows up inside a train station but leaves no trace of any explosive device.
- 4. Momentum Deferred Oct 8, 2009
- Olivia consumes a concoction Dr. Bishop gives her in hopes of stimulating her memory.
- 5. Dream Logic Oct 15, 2009
- The team travels to Seattle to investigate a man who attacked his boss.
- 6. Earthling Nov 5, 2009
- A puzzling investigation tries to explain why victims are disintegrating into ash.
- 7. Of Human Action Nov 12, 2009
- Fringe Division identifies a link between a kidnapping and Massive Dynamic.
- 8. August Nov 19, 2009
- The team uncovers details of the mysterious man known as the Observer.
- 9. Snakehead Dec 3, 2009
- A cargo ship runs aground, littering the shore with bodies hosting a squidlike creature.
- 10. Grey Matters Dec 10, 2009
- A patient at a mental hospital undergoes a surgery that unexpectedly leaves his brain exposed.
- 11. Unearthed Jan 11, 2010
- A teenage girl awakens, seemingly with the mind of a high-ranking Russian soldier.
- 12. Johari Window Jan 14, 2010
- The team investigates a small town where disfigured people attempt to hide themselves.
- 13. What Lies Below Jan 21, 2010
- A painful explosion of blood coincides with the death of a Dutch industrial consultant.
- 14. The Bishop Revival Jan 28, 2010
- A group of wedding guests in Massachusetts suffocate from the inside out.
- 15. Jacksonville Feb 4, 2010
- A violent tremor shakes a Manhattan office building; Olivia must face her mysterious past.
- 16. Peter Apr 1, 2010
- While explaining Peter's otherworldly origins to Olivia, Walter flashes back to 1985.
- 17. Olivia. In the Lab. With the Revolver. Apr 8, 2010
- A perfectly healthy woman inexplicably dies; Olivia tries to keep Walter's secret from Peter.
- 18. White Tulip Apr 15, 2010
- The team investigates when passengers on a commuter train die mysteriously.
- 19. The Man From the Other Side Apr 22, 2010
- A shape-shifting embryo is discovered; Peter shares a family secret with Olivia.
- 20. Brown Betty Apr 29, 2010
- Walter deals with upsetting news and tells Olivia's niece a fairy tale.
- 21. Northwest Passage May 6, 2010
- Peter and Sheriff Mathis investigate a murder case; someone from the "other side" visits.
- 22. Over There, Part 1 May 13, 2010
- Olivia travels to the parallel universe with Walter, who faces-off with William Bell.
- 23. Over There, Part 2 May 20, 2010
- Sacrifices are made and both universes may forever be changed.