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- Season 3 overviewSep 10, 2003-May 26, 200424 episodesSeason 3 episodes1. The Xindi Sep 10, 2003
- The crew seeks out a deadly force that threatens to wipe out all of humanity.
- 2. Anomaly Sep 17, 2003
- Waves of destructive anomalies cripple the Enterprise while its crew is searching for the Xindi.
- 3. Extinction Sep 24, 2003
- Archer, Reed and Hoshi are exposed to a contagious virus while exploring a tropical alien world.
- 4. Rajiin Oct 1, 2003
- A slave girl uses her mental powers on the crew to steal information on humans.
- 5. Impulse Oct 8, 2003
- The crew boards a damaged Vulcan vessel filled with zombie-like creatures.
- 6. Exile Oct 15, 2003
- A lonely telepath begs Hoshi to visit his faraway planet, then refuses to allow her to leave.
- 7. The Shipment Oct 29, 2003
- A Xindi-Sloth plant that synthesizes vital explosive material is infiltrated.
- 8. Twilight Nov 5, 2003
- After an accident on the Enterprise, Archer loses his short-term memory.
- 9. North Star Nov 12, 2003
- Archer and crew discover a human colony seemingly straight out of the Old West.
- 10. Similitude Nov 19, 2003
- Trip is injured in an accident that disables the ship.
- 11. Carpenter Street Nov 26, 2003
- Archer and T'Pol travel to the 21st century to stop the Xindi from destroying Earth.
- 12. Chosen Realm Jan 14, 2004
- The Triannons take the Enterprise crew hostage, bent on eradicating heretics on their home world.
- 13. Proving Ground Jan 21, 2004
- The Andorian Imperial Guard helps steal the Xindi's superweapon.
- 14. Stratagem Feb 4, 2004
- The crew tries to fool the creator of the Xindi weapon into revealing its location.
- 15. Harbinger Feb 11, 2004
- Feuding disrupts an investigation of a rescued alien; T'Pol confesses her feelings for Trip.
- 16. Doctor's Orders Feb 18, 2004
- Dr. Phlox and T'Pol are in charge of the ship after the crew is put into a sleep state.
- 17. Hatchery Feb 25, 2004
- Archer goes to extremes to save an abandoned nest of Xindi-Insectoid eggs.
- 18. Azati Prime Mar 3, 2004
- Archer plans to sacrifice himself to destroy the Xindi weapon; Daniels arrives to dissuade him.
- 19. Damage Apr 21, 2004
- Archer sacrifices his ethics in order to intercept the Xindi weapon.
- 20. The Forgotten Apr 28, 2004
- Archer attempts to convince Xindi weapon-designer, Degra, that humanity is not his enemy.
- 21. E2 May 5, 2004
- A ship from the future warns the Enterprise about a wormhole.
- 22. The Council May 12, 2004
- T'Pol and Reed lead a team on a mission to obtain information about the spheres.
- 23. Countdown May 19, 2004
- Archer launches an assault on the superweapon speeding toward Earth.
- 24. Zero Hour May 26, 2004
- Archer puts his life on the line to disarm the superweapon from within.