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- Season 3 overviewSep 20, 2011-May 15, 201223 episodesSeason 3 episodes1. Lange, H. Sep 20, 2011
- The team searches for Hetty in Romania; Callen uncovers information about his past.
- 2. Cyber Threat Sep 27, 2011
- Searching for the mastermind of a cyberattack on the Department of Defense.
- 3. Backstopped Oct 4, 2011
- Sam, working under cover as a bomb specialist, tries to help the team find stolen explosives.
- 4. Deadline Oct 11, 2011
- A news reporter's murder leads to an investigation into Libya's rebel movement.
- 5. Sacrifice Oct 18, 2011
- A case exposes a link between a Mexican drug cartel and a terrorist.
- 6. Lone Wolf Oct 25, 2011
- The team discovers a murdered former Navy intelligence officer was leading a double life.
- 7. Honor Nov 1, 2011
- The team must establish whether a dishonorably discharged Marine is being framed for a murder.
- 8. Greed Nov 8, 2011
- The team investigates a hazardous material smuggling case in Mexico.
- 9. Betrayal Nov 15, 2011
- Callen and the team try to track down Sam when he disappears during a mission in Sudan.
- 10. The Debt Nov 22, 2011
- After a botched assignment, Hetty is forced to fire Deeks; Kensi struggles with unexpected emotions.
- 11. Higher Power Dec 13, 2011
- The team searches for a dangerous device that was stolen from a college research facility.
- 12. The Watchers Jan 3, 2012
- Nell goes under cover as replacement for a dead Defense Department researcher.
- 13. Exit Strategy Jan 10, 2012
- The team must find the person behind an ambush on a vehicle carrying Jada Khaled.
- 14. Partners Feb 7, 2012
- When a van transporting unidentified contents is hijacked, the team must determine what was stolen.
- 15. Crimeleon Feb 14, 2012
- An assistant director critiques the team members as they track an elusive, chameleonlike killer.
- 16. Blye, K. Feb 21, 2012
- Kensi Blye is accused of murdering one of the colleagues of her now-deceased father.
- 17. Blye, K., Part 2 Feb 28, 2012
- The team searches for evidence of Kensi's innocence after a private meeting turns deadly.
- 18. The Dragon and the Fairy Mar 20, 2012
- The team investigates when a man is shot outside of the Vietnamese Consulate.
- 19. Vengeance Mar 27, 2012
- The evidence in a Navy officer's death points to a team of SEALs about to embark on a mission.
- 20. Patriot Acts Apr 10, 2012
- The team and the FBI investigate when an ex-Marine is suspected of making a chemical bomb.
- 21. Touch of Death May 1, 2012
- Callen, Hanna, and Five-0 members pursue a suspect harboring a deadly virus.
- 22. Neighborhood Watch May 8, 2012
- Kensi and Deeks pose as a married couple as they try to expose a Russian sleeper cell.
- 23. Sans Voir, Parts I & II May 15, 2012
- The team confronts a vengeful adversary, when an undercover case ignites a deadly mind game.