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- Season 5 overviewSep 17, 2009-May 20, 201022 episodesSeason 5 episodes1. Harbingers in the Fountain Sep 17, 2009
- Angela's psychic alerts Brennan and Booth to the presence of a mass grave beneath a fountain.
- 2. The Bond in the Boot Sep 24, 2009
- A man is murdered for the undisclosed contents of his briefcase.
- 3. The Plain in the Prodigy Oct 1, 2009
- Human remains are found next to a railroad; Cam deals with the stress of being a new parent.
- 4. The Beautiful Day in the Neighborhood Oct 8, 2009
- Human remains are found at a neighborhood party, scandals and suburban politics give many a motive.
- 5. A Night at the Bones Museum Oct 15, 2009
- Brennan and Booth investigate what appear to be charred human remains on an electrical fence.
- 6. The Tough Man in the Tender Chicken Nov 5, 2009
- The Jeffersonian team investigates when the mutilated remains of a chicken farmer are found.
- 7. The Dwarf in the Dirt Nov 12, 2009
- Booth must be recertified for FBI marksmanship; the death of a little person.
- 8. The Foot in the Foreclosure Nov 19, 2009
- Brennan and Booth investigate human remains that were found by a real estate agent.
- 9. The Gamer in the Grease Dec 3, 2009
- The remains of a competitive gamer are found in a grease truck.
- 10. The Goop on the Girl Dec 10, 2009
- Brennan's father invites a distant relative to spend Christmas with him and his daughter.
- 11. The X in the File Jan 14, 2010
- Brennan and Booth travel to Mexico to investigate human remains with extraterrestrial attributes.
- 12. The Proof in the Pudding Jan 21, 2010
- Government agents demand that Brennan and her team determine a cause of death for a set of remains.
- 13. The Dentist in the Ditch Jan 28, 2010
- A human skeleton is found in the trenches of a Civil War battleground.
- 14. The Devil in the Details Feb 4, 2010
- Brennan and Booth investigate a set of uniquely disfigured remains allegorizing biblical text.
- 15. Bones on the Blue Line Apr 1, 2010
- A partially skeletonized body is discovered after a subway train is derailed by flood water.
- 16. The Parts of the Sum of the Whole Apr 8, 2010
- Recounting the events of the first case on which Brennan and Booth worked together.
- 17. The Death of the Queen Bee Apr 15, 2010
- Brennan returns to her former high school when unidentified human remains are discovered.
- 18. The Predator in the Pool Apr 22, 2010
- Brennan and Booth are asked to identify human remains found inside the belly of a shark.
- 19. The Rocker in the Rinse Cycle Apr 29, 2010
- Booth and Brennan investigate a death at a rock `n' roll fantasy camp.
- 20. The Witch in the Wardrobe May 6, 2010
- When a cabin in the woods burns down, the bodies of two witches are revealed.
- 21. The Boy With the Answer May 13, 2010
- Everyone at the Jeffersonian tries to help elicit a conviction in the trial of the Gravedigger.
- 22. The Beginning in the End May 20, 2010
- The remains of a hoarder are discovered; Booth and Brennan are confronted with unique opportunities.