Carl Weathers
Lieutenant Harry Braker
Search results
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes - Gaius-Augustus/BRAKER.
BRAKER3 is the latest pipeline in the BRAKER suite. It enables the usage of RNA-seq and protein data in a fully automated pipeline to train and predict highly reliable genes with GeneMark-ETP and AUGUSTUS.
- link.springer.com
- › Gene Prediction
Apr 25, 2019 · BRAKER is a pipeline for highly accurate and fully automated gene prediction in novel eukaryotic genomes. It combines two major tools: GeneMark-ES/ET and AUGUSTUS. GeneMark-ES/ET learns its parameters from a novel genomic sequence in a fully automated fashion; if available, it uses extrinsic evidence for model refinement.
BRAKER is a pipeline for highly accurate and fully automated gene prediction in novel eukaryotic genomes. It combines two major tools: GeneMark-ES/ET and AUGUSTUS. GeneMark-ES/ET learns its parameters from a novel genomic sequence in a fully automated fashion; if available, it uses extrinsic evidenc ….
- www.ncbi.nlm.nih.gov
- › Journal List
- › bioRxiv
Jun 10, 2023 · BRAKER3 is the latest genome annotation pipeline that continues the BRAKER family. It requires three types of inputs: the genome sequence to annotate, a list of short-read RNA-seq datasets and a protein database file.
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes - Gaius-Augustus/BRAKER
Feb 29, 2024 · BRAKER3 outperformed BRAKER1 and BRAKER2. The average transcript-level F1-score was increased by ~20 percentage points on average, while the difference was most pronounced for species with large and complex genomes. BRAKER3 also outperformed other existing tools, MAKER2, Funannotate and FINDER.
Nov 25, 2021 · Therefore, we present Transcript Selector for BRAKER (TSEBRA), a fast software tool for selecting gene predictions from the output of two branches of the BRAKER eukaryotic gene prediction suite based on all the heterogeneous extrinsic evidence. TSEBRA achieves high accuracy and is easy to use.
Feb 4, 2019 · BRAKER is a pipeline for highly accurate and fully automated gene prediction in novel eukaryotic genomes. It combines two major tools: GeneMark-ES/ET and AUGUSTUS.
BRAKER is a pipeline for highly accurate and fully automated gene prediction in novel eukaryotic genomes. It combines two major tools: GeneMark-ES/ET and AUGUSTUS. GeneMark-ES/ET learns its parameters from a novel genomic sequence in a fully automated fashion; if available, it uses extrinsic evidence for model refinement.
