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- Season 3 overviewOct 3, 2016-May 15, 201724 episodesSeason 3 episodes1. Civil War & More Civil War Oct 3, 2016
- The team jumps to action when hackers take over targeted U.S. military aircraft and war ships.
- 2. It Isn't the Fall That Kills You Oct 10, 2016
- When Walter is accidentally launched into space in a rocket, it's up to the team to bring him home.
- 3. Little Boy Lost Oct 17, 2016
- A boy from Ralph's class goes missing after having a run-in with a deadly criminal.
- 4. Plight at the Museum Oct 24, 2016
- A simple job at a museum turns deadly when thieves steal things from a rare gem exhibit.
- 5. Bat Poop Crazy Oct 31, 2016
- The team enters a cave system to prevent a bat population from harming the North American ecosystem.
- 6. We're Gonna Need a Bigger Vote Nov 7, 2016
- On election day, someone tries to create turmoil in the U.S. presidential election.
- 7. Sly and the Family Stone Nov 14, 2016
- In Ireland, Walter discovers a natural disaster at a lake that could threaten an entire village.
- 8. Mother Load Nov 21, 2016
- Paige's estranged mother stumbles upon a forgotten nuclear reactor precariously close to exploding.
- 9. This Is the Pits Dec 12, 2016
- Walter takes a perilous swim to rescue a woman trapped in the La Brea tar pits.
- 10. Wreck the Halls Dec 19, 2016
- Team Scorpion encounters gunrunners while spending Christmas Eve at a mountain getaway.
- 11. Ice Ca-Cabes Jan 2, 2017
- Team Scorpion must freeze Cabe's body after he's seriously wounded during a mission in the desert.
- 12. Faux Money Maux Problems Jan 16, 2017
- Team Scorpion is duped into producing counterfeit cash for a group bent on ruining the U.S. economy.
- 13. The Hole Truth Jan 23, 2017
- A man is stuck on the edge of a massive sink hole that could destroy the Los Angeles water supply.
- 14. Sharknerdo Feb 6, 2017
- Team Scorpion's job to find sunken treasure goes awry when Walter and Paige's boat explodes.
- 15. Keep It in Check, Mate Feb 13, 2017
- On foreign soil, Walter and Sylvester go under cover in an attempt to extricate a U.S. spy.
- 16. Dirty Seeds, Done Dirt Cheap Feb 20, 2017
- Happy, Sylvester and Cabe suffer from hallucinations after the protection of a seed bank goes awry.
- 17. Don't Burst My Bubble Feb 27, 2017
- Happy's friend Ada, who has a compromised immune system, is in danger after a severe storm.
- 18. Monkey See, Monkey Poo Mar 13, 2017
- The team must locate an endangered monkey in the Amazon to stop a dangerous virus from spreading.
- 19. Broken Wind Mar 20, 2017
- The team races to save Paige and Happy when a wire supporting the gondola they are in snaps.
- 20. Rock Block Apr 10, 2017
- An asteroid contains DNA strands that could have deadly consequences if they are exposed.
- 21. Strife on Mars Apr 17, 2017
- The team attempts to extract a pair of scientists trapped inside a bio-dome designed for Mars.
- 22. Something Burrowed, Something Blew May 1, 2017
- After extinguishing a fire, the team helps Toby and Happy get to their wedding ceremony.
- 23. Maroon 8 May 8, 2017
- Team Scorpion's plane crash-lands on a deserted island while en route to Toby and Happy's honeymoon.
- 24. Scorp Family Robinson May 15, 2017
- Team Scorpion must overcome personal conflicts to be rescued from the desert island.