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- Season 2 overviewOct 1-Dec 24, 198813 episodesSeason 2 episodes1. Return of the Shredder Oct 1, 1988
- Shredder returns from Dimension X, but Krang denies him aid until he proves himself.
- 2. The Incredible Shrinking Turtles Oct 8, 1988
- Shredder shrinks the turtles using a piece of a magical artifact.
- 3. It Came From Beneath the Sewers Oct 15, 1988
- Shredder unleashes a giant mutant plant on the city; April is kidnapped.
- 4. The Mean Machine Oct 22, 1988
- Shredder builds a supercomputer to attempt opening a portal to Dimension X.
- 5. The Curse of the Evil Eye Oct 29, 1988
- Shredder completes the Eye of Sarnoth, but it falls into someone else's hands.
- 6. The Case of the Killer Pizzas Nov 5, 1988
- Krang sends a deadly pizza that spawns alien creatures.
- 7. Enter: The Fly Nov 12, 1988
- The turtles foil Shredder's plot to use New York landmarks in an experiment.
- 8. Invasion of the Punk Frogs Nov 19, 1988
- Shredder accidentally mutates four frogs and then pits them against the Turtles.
- 9. Splinter No More Nov 26, 1988
- Donatello devises a cure to turn Splinter human again; Shredder plans to open a gate to Dimension X.
- 10. New York's Shiniest Dec 3, 1988
- Robotic cop Rex-1 helps the Turtles and April defeat a robot army.
- 11. Teenagers From Dimension X Dec 10, 1988
- The Neutrinos return to Earth to warn the Turtles of a new plot against them.
- 12. The Catwoman From Channel 6 Dec 17, 1988
- A freak accident turns April into a cat person and Irma recruits the Turtles to help her.
- 13. Return of the Technodrome Dec 24, 1988
- The Technodrome threatens to return to Earth while Splinter is on a retreat.