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1. www.nature.com › articles › s41564/020/0755-4Doubling of the known set of RNA viruses by metagenomic ...

   www.nature.com › articles › s41564/020/0755-4

   Jul 20, 2020 · Pisuviricota accommodated another large clade with 343 RdRPs related to those of Dicistroviridae (order Picornavirales; Fig. 2), which infect marine and terrestrial arthropods 30,46.

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2. academic.oup.com › mbe › articleIdentification of RNA Virus–Derived RdRp Sequences in ...

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   Apr 4, 2023 · Typically, actual full-length viral RdRp core sequences range approximately from 350 to 600 a.a. in length (depending on virus clade). Most of the shorter sequences found derived from the TSA database.

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   Which clade is a pisuviricota RdRp?

   • The fourth clade (101 members) of the Yangshan virome RdRPs within Pisuviricota (including OV.16 and OV.23; Supplementary Datasets 1 and 2) is a sister group to Potyviridae, the largest family of plant viruses 47, 48.

   Doubling of the known set of RNA viruses by metagenomic ... - Nature

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   Is there a clade of rcr90 RdRPs within botourmiaviridae (Lenar?

   • Outside of Pisuviricota and Kitrinoviricota, we detected only a small clade consisting of 2 permuted RCR90 RdRPs within Botourmiaviridae ( Lenarviricota ). Here, we annotated the identified viruses via an extensive search for protein domains (see STAR Methods and Figure S3 ). In line with previous studies (

   Expansion of the global RNA virome reveals diverse clades of

   www.cell.com/cell/fulltext/S0092-8674(22)01118-7

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   Does phylum pisuviricota have multiple groups of +ssRNA viruses?

   • This result is consistent with the placement by Wolf et al. (2018) of Partitiviridae together with multiple groups of +ssRNA viruses in Branch 2, making the recently established phylum Pisuviricota. The Picornaviridae pHMM contained many divergent sequences, enabling it to accommodate and tolerate very high diversity.

   Identification of RNA Virus–Derived RdRp Sequences in Publicly

   academic.oup.com/mbe/article/40/4/msad060/7103499

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   How can RdRp phylogenetic data be used to identify new viruses?

   • The pipeline can infer the phylogenetic relationships between RdRp sequences extracted from the RefSeq viral database and the users’ own assembled contigs or protein datasets. The results from OrViT can be used for the taxonomic identification of novel viruses and suggest revisions of the existing phylogeny of RNA viruses.

   Frontiers | Global phylogenetic analysis of the RNA-dependent RNA

   www.frontiersin.org/articles/10.3389/fviro.2022.981177/full

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4. www.ncbi.nlm.nih.gov › pmc › articlesDoubling of the known set of RNA viruses by metagenomic ...

   www.ncbi.nlm.nih.gov › pmc › articles

   Jul 20, 2020 · Note that this lineage of permuted RdRPs is confidently lodged as additional clade in Branch 2 (Pisuviricota) as a sister to Partitiviridae lineage. Of the 387 long Yan-like contigs, 220 encode a distinct SJR-CP and 100 encode a capping enzyme.

   • Author: Yuri I Wolf, Sukrit Silas, Yongjie Wang, Shuang Wu, Michael Bocek, Darius Kazlauskas, Mart Krupovic,...
   • DOI: 10.1038/s41564-020-0755-4

   • Publish Year: 2020
   • Publication: Nat Microbiol. 2020; 5(10): 1262-1270.

5. en.wikipedia.org › wiki › Positive-strand_RNA_virusPositive-strand RNA virus - Wikipedia

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   Based on phylogenetic analysis of RdRp, all other RNA viruses are considered to comprise a sister clade in relation to Lenarviricota. Pisuviricota False-color Transmission electron micrograph of a SARS-CoV-2 virion. Coronaviruses like SARS-CoV-2 fall in the phylum Pisuviricota.

6. www.nature.com › articles › s43705/022/00110-xRNA-viromics reveals diverse communities of soil RNA viruses ...

   www.nature.com › articles › s43705/022/00110-x

   Apr 8, 2022 · This divides the Riboviria realm into five phyla, based on RdRP amino acid multiple sequence alignments: positive-sense single-stranded Lenarviricota, Pisuviricota (including some double-stranded...

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8. www.cell.com › cell › fulltextExpansion of the global RNA virome reveals diverse clades of ...

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   Sep 28, 2022 · Outside of Pisuviricota and Kitrinoviricota, we detected only a small clade consisting of 2 permuted RCR90 RdRPs within Botourmiaviridae (Lenarviricota). Expansion of the protein domain repertoire of RNA viruses

9. www.frontiersin.org › articles › 10Frontiers | Global phylogenetic analysis of the RNA-dependent ...

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   Aug 15, 2022 · The PDB IDs are 1RA6 (Pisuviricota RdRp), 6V85 (Negarnaviricota RdRp), 4GZK (Duplornaviricota RdRp), 2XI2 (Kitrinoviricota RdRp), 4R71 (Lenarviricota RdRp) and 1MU2 (Reverse Transcriptase). The RdRp core domain of 1RA6 comprises residues 139 to 404 of chain A (1RA6:A:139-404) based on the GenBank annotation.