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- Season 11 overviewOct 1, 2015-Jul 21, 201622 episodesSeason 11 episodes1. The Loyalty in the Lie Oct 1, 2015
- Brennan becomes interested in a case to which she has personal ties; Booth goes missing.
- 2. The Brother in the Basement Oct 8, 2015
- Booth's location becomes murkier when it's discovered that Miller has been hiding vital information.
- 3. The Donor in the Drink Oct 15, 2015
- When Brennan and Booth officially resume their jobs, remains are found at a fish farm.
- 4. The Carpals in the Coy-Wolves Oct 22, 2015
- Brennan enlists help in the investigation into the death of a real estate agent.
- 5. The Resurrection in the Remains Oct 29, 2015
- While investigating a case, Brennan and Booth encounter Ichabod Crane and Abbie Mills.
- 6. The Senator in the Street Sweeper Nov 5, 2015
- Two sanitation workers find a U.S. senator's corpse in a street sweeper.
- 7. The Promise in the Palace Nov 12, 2015
- An escape artist's corpse is found in the woods; Angela works on her photography with Sebastian.
- 8. High Treason in the Holiday Season Nov 19, 2015
- A political journalist is murdered after publishing an article regarding corruption in the NSA.
- 9. The Cowboy in the Contest Dec 10, 2015
- Booth and Brennan go under cover at an Old West-style shooting competition.
- 10. The Doom in the Boom Dec 10, 2015
- The team investigates a police officer's murder; the team decides what is truly important.
- 11. The Death in the Defense Apr 14, 2016
- When a public defender is murdered, several of her previous clients had motives to kill her.
- 12. The Murder of the Meninist Apr 21, 2016
- The team investigates the death of a men's rights organization founder.
- 13. The Monster in the Closet Apr 28, 2016
- A serial killer appears to have sinister interactions with victims' bodies before dumping them.
- 14. The Last Shot at a Second Chance May 5, 2016
- A suspect in the murder of a felon who had been released to a halfway house has ties to Booth.
- 15. The Fight in the Fixer May 12, 2016
- The team investigates the death of a private investigator found frozen in the Potomac.
- 16. The Strike in the Chord May 19, 2016
- The team investigates the death of an a cappella singer whose body was found in a lab rat.
- 17. The Secret in the Service May 26, 2016
- A student discovers the dead body of a Secret Service agent just before a presidential visit.
- 18. The Movie in the Making Jun 2, 2016
- A documentary crew producing a television segment on the Medico-Legal lab follows the team.
- 19. The Head in the Abutment Jun 16, 2016
- The team investigates the death of a hockey player whose headless corpse was left in the river.
- 20. The Stiff in the Cliff Jun 23, 2016
- The team investigates the murder of a billionaire explorer who went missing 10 years earlier.
- 21. The Jewel in the Crown Jul 14, 2016
- A diamond is found in the jaw of a corpse discovered at a glass recycling plant.
- 22. The Nightmare in the Nightmare Jul 21, 2016
- The team attempts to find The Puppeteer, a serial killer from the past.