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- Season 5 overviewSep 17, 2005-May 13, 200613 episodesSeason 5 episodes1. I Am Legion Sep 17, 2005
- Gorilla Grodd invites Lex Luthor to join the Legion of Doom, a new alliance of super villains.
- 2. Shadow of the Hawk Sep 17, 2005
- An archaeologist approaches Shayera with evidence that Thanagarians visited Earth 8,000 years ago.
- 3. Chaos at the Earth's Core Sep 24, 2005
- Supergirl, Stargirl, STRIPE and Green Lantern try to free a hidden land from the threat of a wizard.
- 4. To Another Shore Sep 24, 2005
- Wonder Woman uncovers a plot to steal powers from the frozen remains of a legendary Viking warrior.
- 5. Flash and Substance Feb 11, 2006
- A group of Central City rogues unite to attack a museum opening in Flash's honor.
- 6. Dead Reckoning Feb 18, 2006
- A ghost asks for the League's help in recovering the stolen souls of his monastic order.
- 7. Patriot Act Feb 25, 2006
- Green Arrow and a team of non-powered superheroes battle a mutated and enraged Gen. Eiling.
- 8. The Great Brain Robbery Mar 4, 2006
- A magical accident causes the Flash and Lex Luthor to exchange minds.
- 9. Grudge Match Mar 11, 2006
- Roulette returns with a new, all-female version of Metabrawl featuring mind-controlled heroes.
- 10. Far From Home Apr 15, 2006
- Future heroes in dire need bring Supergirl, Green Lantern and Green Arrow to the 31st century.
- 11. Ancient History Apr 29, 2006
- The Shadow Thief abducts Green Lantern, Shayera and Hawkman to reveal an ancient connection.
- 12. Alive! May 6, 2006
- As Lex Luthor looks for remaining traces of Brainiac, Grodd breaks free and leads a mutiny.
- 13. Destroyer May 13, 2006
- The Justice League must work together with the Legion of Doom to stop Darkseid from ruling Earth.