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Call peaks using MACS. Fragment files linked to the specified assay will be used to call peaks. If multiple fragment files are present, all will be used in a single MACS invocation. Returns the .narrowPeak MACS output as a GRanges object.
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The article examines the relations between the Central Asian Cuman-Qïpchaq tribes and two of the most important cities along the Syr Darya, Jand and Sïghnaq for the entire period of Cuman-Qïpchaq domination over the steppes of Western Eurasia
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Apr 4, 2024 · For this tutorial, we will be analyzing a single-cell ATAC-seq dataset of human peripheral blood mononuclear cells (PBMCs) provided by 10x Genomics. The following files are used in this vignette, all available through the 10x Genomics website: The Raw data. The Metadata. The fragments file. The fragments file index. View data download code.
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Apr 4, 2024 · scATAC-seq data integration. Compiled: April 04, 2024. Here we demonstrate the integration of multiple single-cell chromatin datasets derived from human PBMCs. One dataset was generated using the 10x Genomics multiome technology, and includes DNA accessibility and gene expression information for each cell. The other dataset was profiled using ...
