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  1. Information, documentation, and news about the HyPhy software package

  2. Jan 9, 2023 · A software tool is a system program that suitably interfaces a program with other. programs or human users in its environment. The tasks performed by software tools cover a wide spectrum from mundane tasks of interfacing to sophisticated tasks that improve the effectiveness of a user’s activity. Examples of software tools at the two ends of ...

  3. Some HyPhy configurations also depends on other development libraries like libcurl and libpthread. Libcurl requires development libraries such as crypto++ and openssl (or gnutls depending on your configuration). On Ubuntu these are libcurl-dev, libcrypto++-dev and libssl-dev. You can obtain HyPhy source in two ways:

  4. The specific example for which this tool was developed is evolution of HIV in different hosts or different compartments (blood vs brain) in the host. Similar situations arise when the gene is sampled from species living in different environment, eating different food, having different wavelength eye sensitivity.

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  7. HyPhy provides a suite of tools for analyzing phylogenetic sequence data, in particular for inferring the strength of selection from sequence data. In addition, HyPhy features a flexible batch language for implementing and customizing discrete state Markov models in a phylogenetic framework.

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