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- Season 2 overviewOct 23, 2010-Oct 14, 201126 episodesSeason 2 episodes1. Another Order of Evil! Oct 23, 2010
- Dr. Doom plots his escape with Wrecker and Thunderball, while Ms. Marvel tries to reunite the squad.
- 2. Another Order of Evil! Oct 23, 2010
- The Skrulls capture the squad during their search for Captain Marvel.
- 3. World War Witch! Oct 30, 2010
- Thanos tries to send the squad back in time, but Scarlet Witch gets sent back instead.
- 4. Support Your Local Sky-Father! Oct 30, 2010
- Thor and Hercules must set aside their differences in order to save Olympus.
- 5. Villainy Redux Syndrome! Nov 6, 2010
- Doctor Doom, Abomination and M.O.D.O.K. plan to break out of prison.
- 6. Whom Continuity Would Destroy! Nov 20, 2010
- Thanos recruits Iron Man, Hulk and Scarlet Witch in an effort to obtain the Grandmaster's Mind Gem.
- 7. Double Negation at the World's End! Nov 27, 2010
- Nebula accidentally transports herself, Wolverine and HERBIE into the Negative Zone.
- 8. Alienating With the Surfer! Jan 8, 2011
- The Squad tries to stop Galactus from devouring the Skrull's homeland.
- 9. Blind Rage Knows No Color! Jan 15, 2011
- Iron Man, Thor and Wolverine have to get help from Nightmare to cure Hulk's sleep-walking rampage.
- 10. Lo, How the Mighty Hath Abdicated! Jan 22, 2011
- Odin must abdicate his throne; Magneto and Quicksilver look for the Scarlet Witch.
- 11. So Pretty When They Explode! Jan 29, 2011
- Iron Man recruits help to stop Thanos from destroying Nova Corps and getting the Power Gem.
- 12. Too Many Wolverines! Feb 5, 2011
- Reptil and Wolverine chase Egghead's escaped Wolverine clones.
- 13. Pedicure and the Facial of Doom! Feb 12, 2011
- Doctor Doom learns his mother has opened a day spa for heroes.
- 14. Fate of Destiny! Feb 19, 2011
- When Thanos gets all of the Infinity Stones, the Squaddies face betrayal.
- Dark Surfer has banished the Squaddies through time and space. Thor finds himself on space station Scuttlebut where janitor Beta Ray Bill is holding off the Stranger's attack. What is more, Thor agrees to do so without the help of Mjolnir.—The TV Archaeologist
- Falcon faces a dark future in which the Scarlet Witch is an empress.
- 17. This Man Thing, This Monster! Oct 3, 2011
- A powerless Iron Man attempts to help Man-Thing while stranded on a planet of monsters.
- 18. The Devil Dinosaur, You Say Oct 4, 2011
- Wolverine winds up on a world populated mainly by dinosaurs.
- 19. Brouhaha at the World's Bottom Oct 5, 2011
- Hulk crash-lands on the planet Sakaar and is forced to enter gladiatorial combat by the Red King.
- 20. Missing: Impossible Oct 6, 2011
- Impossible Man's wife kicks him out.
- 21. Revenge of the Baby Sat Oct 7, 2011
- The Super Hero Squad suffers a time mishap that transforms several of the Squad into toddlers.
- 22. Soul Stone Picnic Oct 10, 2011
- Ms. Marvel leads the Squad on a mission to rescue Captain Marvel from the Dark Surfer.
- 23. Planet Hulk Oct 11, 2011
- Hulk crash-lands on the planet Sakaar and is forced into battle by the Red King.
- 24. 1602! Oct 12, 2011
- Scarlet Witch ends up in the year of 1602 where she tries to defend a town.
- 25. When Strikes the Surfer Oct 13, 2011
- Dark Surfer prepares to end the universe and the half-frozen Super Hero Squad mounts a last attack.
- 26. The Final Battle (Nuff Said) Oct 14, 2011
- The final showdown between the Squad and their former team member, the Dark Surfer.