1997
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- OverviewJul 14, 2006-Jun 22, 200720 episodesEpisodes20. First Strike Jun 22, 2007
- A Replicator attack forces Atlantis to sink back into the ocean.
- 19. Vengeance Jun 15, 2007
- While seeking a missing village, Col. Sheppard and his team find more than they bargained for.
- 18. Submersion Jun 8, 2007
- While searching for a geothermal drilling station, the team unknowingly awakens a Wraith queen.
- 17. Sunday Jun 1, 2007
- When the crew is ordered to take a personal day, an explosion rocks the city.
- 16. The Ark May 18, 2007
- Sheppard and his crew awaken a race of people stored in stasis on a hollowed-out moon.
- 15. The Game May 11, 2007
- McKay and Sheppard discover the simulator game they have been playing for a year is real.
- 14. Tao of Rodney May 4, 2007
- Rodney McKay begins to evolve into a superhuman after a device the Ancients left running zaps him.
- 13. Irresponsible Apr 27, 2007
- Lucius is up to his old tricks; Kolya and his men draw the team into a fight.
- 12. Echoes Apr 20, 2007
- Teyla believes apparitions are Ancients trying to warn of danger.
- 11. The Return Apr 13, 2007
- Gen. O'Neill and Richard Woolsey find themselves trapped on Atlantis; Col. Sheppard plans a rescue.
- 10. The Return Sep 22, 2006
- Ancients return to Atlantis after thousands of years and ask the Stargate team to vacate the city.
- 9. Phantoms Sep 15, 2006
- The effects of an abandoned Wraith experiment threaten to turn team members against one another.
- 8. McKay & Mrs. Miller Sep 8, 2006
- The Air Force enlists McKay's estranged sister to implement an experiment in Atlantis.
- 7. Common Ground Aug 25, 2006
- The Genii take Sheppard prisoner, but he enlists an unlikely ally.
- 6. The Real World Aug 18, 2006
- Dr. Elizabeth Weir awakens to find that her Atlantis experience was a figment of her imagination.
- 5. Progeny Aug 11, 2006
- A reference in the Atlantis database leads the team to a thriving civilization.
- 4. Sateda Aug 4, 2006
- Ronon's past catches up with him when the Wraith capture and hunt him as a runner.
- 3. Irresistible Jul 28, 2006
- Members of the Atlantis team find themselves in the thrall of an obnoxious but powerful man.
- 2. Misbegotten Jul 21, 2006
- The Atlantis team must decide what to do with hundreds of human-form Wraith prisoners.
- 1. No Man's Land Jul 14, 2006
- After stealing information from the Atlantis database, two Wraith hive ships travel toward Earth.