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- Season 2 overviewSep 28, 2004-May 24, 200523 episodesSeason 2 episodes23. Twilight May 24, 2005
- Gibbs is the target of a terrorist assassination team in Washington, D.C.
- 22. SWAK May 10, 2005
- Tony and Kate are put into biohazard isolation after being exposed to a mysterious powder.
- 21. Hometown Hero May 3, 2005
- Gibbs works to clear the name of a fallen soldier accused of murder.
- 20. Red Cell Apr 26, 2005
- Gibbs and the team investigate the murder of a Marine in an ROTC unit.
- 19. Conspiracy Theory Apr 12, 2005
- A petty officer appears to commit suicide after being institutionalized.
- 18. Bikini Wax Mar 29, 2005
- A petty officer recently returned from duty is found dead backstage at a local bikini contest.
- 17. An Eye for an Eye Mar 22, 2005
- When a sailor gets a package containing two eyes, Gibbs investigates.
- 16. Pop Life Mar 1, 2005
- A female petty officer is found dead in the bed of a dance club bartender.
- 15. Caught on Tape Feb 22, 2005
- A Marine records his own death -- on video -- with his fall from a cliff during a camping trip.
- 14. Witness Feb 15, 2005
- A woman claims to have witnessed a murder but there's no evidence of a crime.
- 13. The Meat Puzzle Feb 8, 2005
- Bodies found stuffed in a barrel are identified as a prosecutor and a sheriff.
- 12. Doppelganger Jan 18, 2005
- A telemarketer reports the murder of a petty officer after he hears it over the phone.
- 11. Blackwater Jan 11, 2005
- A private detective helps the team probe a naval officer's murder.
- 10. Chained Dec 14, 2004
- Tony goes under cover as an escaped prisoner chained to a dangerous convict.
- 9. Forced Entry Dec 7, 2004
- A Marine's wife kills the intruder who tried to rape her; the team investigates a serial rapist.
- 8. Heart Break Nov 30, 2004
- Gibbs and his team probe the case of a commander who burst into flames.
- 7. Call of Silence Nov 23, 2004
- A World War II veteran confesses to the murder of his best friend.
- 6. Terminal Leave Nov 16, 2004
- The NCIS team's assignment is to protect an Iraqi War veteran being targeted by terrorists.
- 5. The Bone Yard Oct 26, 2004
- Gibbs' partner, agent Fornell, is accused of aiding the Mafia.
- 4. Lt. Jane Doe Oct 19, 2004
- A Navy lieutenant's rape and murder may be linked to an old, unsolved murder case.
- 3. Vanished Oct 12, 2004
- Gibbs and the team investigate and encounter a town convinced that extraterrestrials played a role.
- 2. Good Wives Club Oct 5, 2004
- The decomposed body of a woman in a wedding dress is found in a subterranean cell.
- 1. See No Evil Sep 28, 2004
- The wife and 9-year-old blind daughter of a Navy captain are kidnapped from their home.