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1. github.com › veg › hyphyGitHub - veg/hyphy: HyPhy: Hypothesis testing using Phylogenies

   github.com › veg › hyphy

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   HyPhy - Hypothesis testing using Phylogenies. HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses.

2. www.hyphy.orgHyPhy - Hypothesis Testing using Phylogenies - Information ...

   www.hyphy.org

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   Hypothesis Testing using Phylogenies An open-source software package. for comparative sequence analysis. using stochastic evolutionary models. Download

3. People also ask

   What is hyphy?

   • Cannot retrieve latest commit at this time. HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses.

   GitHub - veg/hyphy: HyPhy: Hypothesis testing using Phylogenies

   github.com/veg/hyphy

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   How does hyphy work?

   • HYPHY supports analysis of nucleotide, protein and codon sequences, using predefined standard models or user-defined models of evolution. The package supports interaction through a graphical user interface as well as a batch language to set up large and complicated analyses and process the results.

   HYPHY (software) - Wikipedia

   en.wikipedia.org/wiki/HYPHY_(software)

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   Is hyphy free?

   • HYPHY is distributed as freeware with source code released under the MIT License. Compiled binaries for Mac OS X and Windows are available for download. The source code is available so that users can compile the HyPhy application on POSIX systems.

   HYPHY (software) - Wikipedia

   en.wikipedia.org/wiki/HYPHY_(software)

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   Can hyphy be run as a command line tool?

   • As noted in the documentation here hyphy can be run as a command line tool. Indeed for many analyses the hyphy CLI will return useful help messages, showing which parameter values can be set to specify your analysis. For example, running hyphy gard --help

   GitHub - veg/hyphy: HyPhy: Hypothesis testing using Phylogenies

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4. en.wikipedia.org › wiki › HYPHY_(software)HYPHY (software) - Wikipedia

   en.wikipedia.org › wiki › HYPHY_(software)

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   HYPHY ( / ˈhaɪfaɪ / HY-fy) is a free multiplatform (Mac, Windows and UNIX) computational phylogenetics software package intended to perform maximum likelihood analyses of genetic sequence data and equipped with tools to test various statistical hypotheses. [1] The HYPHY name is an abbreviation for "HYpothesis testing using PHYlogenies". [2]

   • Developer(s): Sergei L Kosakovsky Pond, Art FY Poon, Steven Weaver, N. Lance Hepler, Martin Smith.
   • Available in: English

   • Stable release: 2.5.24, / 17 December 2020
   • Type: Computational phylogenetics

5. www.youtube.com › watchDownload, install, and run HYPHY in under 10 ... - YouTube

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   13:33

   Download software (https://github.com/veg/hyphy): 00:50Install software: 2:00Run tools: 5:18Visualize results (http://vision.hyphy.org/): 9:45Twitter: @hyphy...

   • Date: Jun 16, 2020
   • Views: 1484
   • Author: Hyphy Vision

6. Videos

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     13:33

     youtube.com

     Download, install, and run HYPHY in under 10 Minutes! A quick intro to our software

     Jun 16, 2020

     1.5K Views

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     4:33

     youtube.com

     The Federation - Hyphy

     May 11, 2012

     516.7K Views

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     27:48

     youtube.com

     Hypnosis: Be A MAGNET For Women. Attract Women Mind Programming

     Jun 28, 2018

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7. academic.oup.com › mbe › articleHyPhy 2.5—A Customizable Platform for Evolutionary Hypothesis ...

   academic.oup.com › mbe › article

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   Aug 27, 2019 · Here, we announce the release of HyPhy version 2.5 and document how the software has been packaged for easy use in a variety of settings, optimized for larger data sets, redesigned to follow modern best practices in software design and engineering, and extended to include a broader set of evolutionary models and prepackaged analyses.

   • Author: Sergei L Kosakovsky Pond, Art F Y Poon, Ryan Velazquez, Steven Weaver, N Lance Hepler, Ben Murrell, ...

   • Publish Year: 2020

8. pubmed.ncbi.nlm.nih.gov › 31504749HyPhy 2.5-A Customizable Platform for Evolutionary Hypothesis ...

   pubmed.ncbi.nlm.nih.gov › 31504749

   Jan 1, 2020 · Abstract. HYpothesis testing using PHYlogenies (HyPhy) is a scriptable, open-source package for fitting a broad range of evolutionary models to multiple sequence alignments, and for conducting subsequent parameter estimation and hypothesis testing, primarily in the maximum likelihood statistical framework. It has become a popular choice for ...

9. help.rc.ufl.edu › doc › HyPhyHyPhy - UFRC - University of Florida

   help.rc.ufl.edu › doc › HyPhy

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   Aug 15, 2022 · HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. HyPhy has over 7000 registered users and has been cited in over 600 peer-reviewed publications ( Google Scholar ). Continued development of HyPhy is currently supported in part by an NIGMS ...